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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015921097.1_cds_XP_016470117.1_62599
CDS Infomation

[gene=LOC107792415] [db_xref=GeneID:107792415] [protein=serine hydroxymethyltransferase, mitochondrial isoform X2] [protein_id=XP_016470117.1] [location=join(41117..41209,41323..41373,41463..41549,42320..42441,42563..42639,42733..42857,43539..43631,44144..44236,44329..44526,44679..44783,45372..45437,45585..45662,46073..46184,46266..46376,52019..52167)] [gbkey=CDS]
Sequence

ATGGCAATGGCTATAGCTCTTCGGAGGCTTTCCTCTACAGTTGACAAACCTGTTAAGCGT
CTCTACAATATTGGTGGCTCTCTCTATTACATGTCATCTTTGCCAAATGAAGCTGTCTAC
GACAAGGAAAAATCTGGAGTCTCCTGGCCAAAGCAACTGAATGCCCCGCTGGAGGTTGTT
GATCCTGAGATTGCTGACATTATTGAGCTTGAGAAAGCTCGCCAATGGAAGGGGCTCGAA
CTCATTCCTTCAGAAAATTTCACTTCCCTTTCGGTGATGCAAGCAGTTGGATCAGTTATG
ACTAACAAGTATAGTGAAGGATATCCTGGTGCCAGATACTATGGAGGAAATGAGTACATA
GACATGGCAGAAACTTTATGCCAAAAACGTGCTTTGGAAGCATTCAGGTTGGATCCTGCA
AAGTGGGGAGTGAATGTGCAGCCTCTATCAGGATCACCTGCTAATTTTCATGTTTACACT
GCATTATTAAAACCTCATGAACGGATCATGGCTCTTGATCTTCCTCATGGTGGACATCTT
TCTCATGGATATCAGACTGATACGAAGAAGATATCCGCAGTCTCTATATTCTTTGAGACA
ATGCCATACAGACTCAATGAGAGCACTGGCTATATTGACTATGACCAGCTTGAGAAAAGT
GCCACACTCTTTAGGCCAAAATTAATTGTTGCTGGTGCTAGTGCCTATGCACGTCTTTAC
GACTATGAACGAATCCGGAAGGTCTGCGACAAACAGAAAGCTATTTTGTTAGCAGATATG
GCACACATTAGTGGATTAGTTGCAGCTGGAGTCATCCCCTCACCATTTGATTATGCTGAT
GTTGTCACTACCACAACCCACAAGTCCCTTCGTGGGCCTCGTGGTGCTATGATTTTCTTC
AGGAAGGGTGTTAAAGAGGTTAACAAGCAAGGCAAGGAGGTTTTGTACGACTATGAAGAC
AAAATCAATCAGGCAGTCTTTCCTGGACTTCAAGGGGGTCCTCACAATCACACCATTACT
GGCTTGGCAGTTGCCTTGAAACAGGCAATCACTCCAGAATACAGAGCTTACCAAGAGCAA
GTCCTCAGCAACTGCTCAAAATTTGCCCAGGCTTTAATGGAGAATGGTTATGAACTTGTC
TCTGGAGGAACCGAGAATCACTTGGTTTTGGTGAACCTGAAAAACAAGGGTATTGATGGT
TCCAGGGTTGAGAAAATCTTGGAAGCTGTACATATTGCAGCCAACAAGAACACTGTTCCT
GGAGATGTATCTGCCATGGTCCCCGGTGGCATCAGGATGGGAACTCCTGCACTCACTTCT
CGGGGATTTGTTGAGGAAGATTTTGTGAAAGTTGCTGAATTCTTTGATGCTGCCGTGAAG
CTAGCAGTGAAAGTAAAGGCTGAAACTCAAGGGACAAAGTTGAAAGACTTTGTAGCAACA
CTACAATCCAGTGCTCCAATCAAATCTGAAATTGCAAAACTCCGTCATGATGTGGAGGAG
TATGCTAAGCAATTCCCTACGATTGGGTTTGAAAAAGAAACAATGAAGTACAAAAACTAA

Peptide Sequence

PEP ID

XP_016470117.1
PEP Infomation

PREDICTED: serine hydroxymethyltransferase, mitochondrial isoform X2 [Nicotiana tabacum]
Sequence

MAMAIALRRLSSTVDKPVKRLYNIGGSLYYMSSLPNEAVYDKEKSGVSWPKQLNAPLEVV
DPEIADIIELEKARQWKGLELIPSENFTSLSVMQAVGSVMTNKYSEGYPGARYYGGNEYI
DMAETLCQKRALEAFRLDPAKWGVNVQPLSGSPANFHVYTALLKPHERIMALDLPHGGHL
SHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLY
DYERIRKVCDKQKAILLADMAHISGLVAAGVIPSPFDYADVVTTTTHKSLRGPRGAMIFF
RKGVKEVNKQGKEVLYDYEDKINQAVFPGLQGGPHNHTITGLAVALKQAITPEYRAYQEQ
VLSNCSKFAQALMENGYELVSGGTENHLVLVNLKNKGIDGSRVEKILEAVHIAANKNTVP
GDVSAMVPGGIRMGTPALTSRGFVEEDFVKVAEFFDAAVKLAVKVKAETQGTKLKDFVAT
LQSSAPIKSEIAKLRHDVEEYAKQFPTIGFEKETMKYKN

Transcript Sequence

Gene sequence data has not been registered.